NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180120_10017595

Scaffold Ga0180120_10017595


Overview

Basic Information
Taxon OID3300017697 Open in IMG/M
Scaffold IDGa0180120_10017595 Open in IMG/M
Source Dataset NameFreshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3363
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Chesapeake Bay
CoordinatesLat. (o)37.1043Long. (o)-76.1811Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008114Metagenome339Y
F073418Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0180120_100175955F073418AGAAGGMTFDKAHLKLIRTSMQEALDSAGIKDVTIKVGNCSYSGGEATYKIQVLLDGAETQEQNALSQMAGYFNLDTTKIAEIQGHKVSLYGYNGKARKMPWQVQSLDGKDKWKLTDEQVRRLFEKDYVS
Ga0180120_100175957F008114AGGAGMKLTINAKAFPDVDPDLLQEMLGVLPYWVGEYNLYGYGRDMYGRDMDIVGFMTERYGFGNLYQFKGEVQDDGMYTTSDDPDLPYVGKMNTPNGNVYFYQYAMLALPLPNGEYFVTRMD
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