NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181339_1011942

Scaffold Ga0181339_1011942


Overview

Basic Information
Taxon OID3300017700 Open in IMG/M
Scaffold IDGa0181339_1011942 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024733Metagenome204Y
F050225Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0181339_10119421F024733N/AMQYKKFDQALHDACDPPARNAVARWLNNLWYIDALPNPDKYAVDLVLSLKGDHIGYAEVEVRDWEFCPFETIHIAHRKDKLFNHPRTTMYVVNRPLTHAYWIRANKIKDCPLIEVPNRAVARDEYFYDVPKDLWKVVDLTDL
Ga0181339_10119422F050225AGGAGMLKSEQDAELFYEAQRKFTDRQRMIDKGWGDLDAYNALRTAEKKKERIESIRMFFWGGVAAVLFCLVFFGTNYLMNGYAI
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