NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181339_1012794

Scaffold Ga0181339_1012794


Overview

Basic Information
Taxon OID3300017700 Open in IMG/M
Scaffold IDGa0181339_1012794 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Sp13.VD.MM110.D.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)971
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039943Metagenome / Metatranscriptome162Y
F067397Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181339_10127942F067397N/AMGKMKELYYELLHANNGEIPEEATIADLARMNDLKIYEWREYERSQNHVKKPKNEGSIKGKQS
Ga0181339_10127943F039943N/AMKEVSKGSSLNEHRQEKEYGWKPVSSKKKPVKKSSEYTYAFIGIIIGLSFGILTSILMYRDSQKCNLLLEENKLLKEMLYY

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