NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181364_1017721

Scaffold Ga0181364_1017721


Overview

Basic Information
Taxon OID3300017701 Open in IMG/M
Scaffold IDGa0181364_1017721 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1181
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005775Metagenome390N
F008615Metagenome / Metatranscriptome330N
F016114Metagenome / Metatranscriptome249Y

Sequences

Protein IDFamilyRBSSequence
Ga0181364_10177211F008615N/ANTFGAKMFGRFIKKGWHISFTDKYQDRVCVIPPERLDAQHVFGIYIPVLRHTWQPDLKREWWAALQTKDCMLGPKFEATAHPDDIERFAAFATWIGDLLRNPEKFT
Ga0181364_10177213F016114N/AMNKYWAAAFFDSREVETINEMAAMARRMLICQGELQRDELARLKMKYPHLTTKD
Ga0181364_10177214F005775AGGAMAKERPIYTKAQHQIITPAFVEKKIQMHKSVKCTTKDERELFIMASASVTRYVPGSKHNTQAPMGFFNLQMGHYNKISIHSRDFKQLADVFEQITLFLRNNANKLDQVVTKELDSYTSHHLTNLLNNEAKP
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