NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181374_1026506

Scaffold Ga0181374_1026506


Overview

Basic Information
Taxon OID3300017702 Open in IMG/M
Scaffold IDGa0181374_1026506 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1020
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)230
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014552Metagenome262Y
F042083Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0181374_10265061F042083AGGAGMARRKPAMPHPSITGMAAGLSVAQYLNQGSALSTKTGVITDIVGGDLQGAFQELSGNAIDLATSTKGKQVLTSAIVLATAGGLARKFFPSVKLGGTRLY
Ga0181374_10265063F014552N/AMSLAKDMKYSLGTPSLMRGLEKGQEAEVKFLTDPKPVETEHGSKFDIQVLLLSHPHPDYSSLEKKGKRLTWRTNCHVVRVTIQDLFEHAVEDFMKDWYELTWTISCREDGNIWVEA

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