Scaffold Ga0181374_1029564

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181374_1029564

Scaffold Ga0181374_1029564

Overview

Basic Information
Taxon OID	3300017702 Open in IMG/M
Scaffold ID	Ga0181374_1029564 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	961
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	230
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005551	Metagenome	397	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181374_10295642	F005551	GAG	MTLGPSESVSRAKDGKIYGWSGSKSLTSSGVTLLNYTNPAAFYLTRVTLGIDWSGISDGEVLSYVILVDGQALFTEKFVVLVNNIGIQPKMFEFMIPPNSTVQIKVFQDSNNGAASCILTGYRV

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