Scaffold Ga0181371_1026760

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181371_1026760

Scaffold Ga0181371_1026760

Overview

Basic Information
Taxon OID	3300017704 Open in IMG/M
Scaffold ID	Ga0181371_1026760 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	952
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F027811	Metagenome	193	Y
F101134	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181371_10267602	F101134	N/A	MKEKVTKKLETSMAELIMIILLIVILLSSCGTSYCVQNEWATPLSKQYSRTCNR
Ga0181371_10267603	F000126	GAG	MVQQNTNMRDFKISRKEGEWYNVEVTDSYGNEYQSYFETAYEANEWIYYVWSKEEWFNSVDSQELLYNAIQQCKEIDEKSNRRKIM
Ga0181371_10267604	F027811	N/A	MIYSEKELREMISNLRLWKEMKNCNLTDASEICLTKYELLLENHLNNKYKDLDEWLHKLIEKNGTTEY

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