NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181371_1029085

Scaffold Ga0181371_1029085


Overview

Basic Information
Taxon OID3300017704 Open in IMG/M
Scaffold IDGa0181371_1029085 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_07 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)910
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003330Metagenome / Metatranscriptome493Y
F047632Metagenome149Y
F103058Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181371_10290851F047632GAGGVKIGDFVQWRDQTNYRGLCGIVTKIGAHTQGMKLRREPPDIFVHWTEFGHDHYQVGAGWEKVSALQLLSTGEIK
Ga0181371_10290853F003330AGGCGGMRKTDAWGKPILKVGDIVQSLPLKDDPGTVVKILQVNANGAHVVAVKWFTWDNGRTSEEHVRELELVSNAE
Ga0181371_10290854F103058N/ASTKMKMVIVFDTEDRDGMANTVKIVDQLAIDYMGRGVNIINKRTFGKIEFIKMLRTFALKVKTEVQDENADTDGTGLRFAKQFSEDVWDRKEGGNRYP
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