NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181372_1003765

Scaffold Ga0181372_1003765


Overview

Basic Information
Taxon OID3300017705 Open in IMG/M
Scaffold IDGa0181372_1003765 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3091
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F101078Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181372_10037651F032640N/ALSKRDRVVSDGHGKVRVILWKTEIAVLDAQTDEIIVKNGGFESVTTKSRINALLSDWARGNPGISQRKWVWYIDEVCPLTRDRKSKEFQGVAAFPLKVWK
Ga0181372_100376511F101078AGGAMKIIKRTGIIKVSEDGVAREIIMRFQGVRLQKVETREIPIRYKPRHYVNIYKDLKHT
Ga0181372_10037655F073494AGGAGMTDNQWESNEISMWVNNDESLHKLARGSVDSTHFLQQLEMMGISEIGGIALTPWNVRESFEDAND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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