NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181372_1007323

Scaffold Ga0181372_1007323


Overview

Basic Information
Taxon OID3300017705 Open in IMG/M
Scaffold IDGa0181372_1007323 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2061
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)85
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y
F105514Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181372_10073233F007537AGGMKKLFYLMAIGVIFTSCQKEEFEIEEPPTNYEFEMVGRTYQDINGYYRVAINPMENQQTLHRFGAYITNRDKYDLPSQVIWRCDAFWYTPDTLGHTYIEIGNVPTGESPWSWENFAVTGYEGMTVPIVNGTSFSDPNTDSVFCMMAPIGAMVGDTVTIYGQAYFEEGMVMLEDNINVIFE
Ga0181372_10073234F017556N/AMANSKFKVGQVVGFPYTGVIGLRQRRGGIITSVEKMYELKDENKRYYPNGICRGELTTIKTLSNGKFKGYAYKCKTIQPKGYVAEMVTIEEFKLKSSTEEKINNSYTGA
Ga0181372_10073235F105514N/AMENLNKKPGQGKTPQQYEDSSRFAWYGVVGMIILLILMHSC
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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