Scaffold Ga0181372_1009673

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181372_1009673

Scaffold Ga0181372_1009673

Overview

Basic Information
Taxon OID	3300017705 Open in IMG/M
Scaffold ID	Ga0181372_1009673 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1749
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)		Depth (m)	85
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024653	Metagenome	205	Y
F041144	Metagenome	160	Y
F066236	Metagenome	127	Y
F074146	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181372_10096733	F041144	GAGG	MLSDAITTVGFALQSHVNTCYHEDTKENRAEREELEVAWAIIKKHLKENEDD
Ga0181372_10096734	F024653	AGGA	MSRDINTIPTVRRHIVSYKIYAEWSDNPKLVELEHEMDGHLENTFNDWLRDIEDEEDLKC
Ga0181372_10096735	F074146	AGGAG	MRSRGYELTEFRNKWKTIYSKTFLNKYIPIHEDLWVDDKEFIETMKKPEGERYIWTVLEENGTWIVTSGYHWVNRIGFIITKNKWEHNMNIQVKGY
Ga0181372_10096737	F066236	AGGAG	MSEYEKLEWLHFAISEAINGNIGELSNALEIVEQLREPHLEENDNANNK

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