Scaffold Ga0181377_1001071

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181377_1001071

Scaffold Ga0181377_1001071

Overview

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1001071 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9173
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018814	Metagenome	233	Y
F077384	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_100107120	F018814	AGGA	MDATKSYIKIHRVNEGEAEDFEYDFDIHSSDLLTELVPDLDNWGDLGWMELEEYEYHAQSQTMNLLIETKWASPTEWLRNASLGSVYFENKLITMATIQKDETCVTGFAAMDGEVLQHKNIFEMESEEVGRYYDDDQPNYDLDHLDNQIWDSIGQFLNVCTQFYQTESEDGNE
Ga0181377_10010719	F077384	GGA	MFQKGDFIVEYKRADRTGGINFGVVMGAEKGFDDMLVLDVVFPRGRLYTFACHCQPYREWLDENSI

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