NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1001332

Scaffold Ga0181377_1001332


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1001332 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8017
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004603Metagenome431Y
F019114Metagenome231Y
F048285Metagenome148N
F097272Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_100133211F048285N/AMDTLSNQWWCKMKIDPIQLEQATAFILETNKYIYEQARELATQHLEVEDNKNFKARVKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKTKKGY
Ga0181377_100133213F004603GAGMIFSININGLIIDWCYTINNQEKQYHQTWIPKLSDIQIITKELNGLTVSEVRKLILEDIQPDLQMVRDNTNKKAKARRQKNV
Ga0181377_10013323F097272AGGAGGMDLTEFGLDKIEVGENSGGGDRVKPGRYNFEYAGSEMIEGKNGWKALKIHFDVEGEIIKVSHAFTMAHNNDKPVEIGRESLMKMLNAMGVASMKNSDELLGKKVEGELVVGEKGYLEIADNFGNGWKAYGTTKANEHVDPKDVLPKEDKEEMFPSDVEDEDDLPF
Ga0181377_10013328F019114AGGAGMKQLEARMVEARDEFYRNKRRKGFMAFWWSDPLHYLLVLEVAIADASSKSINFEAIVKLLPGSMGSRSTVATVLEDFVARGYMCKKVGKDKRERVYTICKDSMVLMNDWFTKRDFSLKAV
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