Scaffold Ga0181377_1004646

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181377_1004646

Scaffold Ga0181377_1004646

Overview

Basic Information
Taxon OID	3300017706 Open in IMG/M
Scaffold ID	Ga0181377_1004646 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3746
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (27.27%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-29.499	Long. (^o)	-71.609	Alt. (m)		Depth (m)	12
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015402	Metagenome / Metatranscriptome	255	Y
F016004	Metagenome / Metatranscriptome	250	Y
F070147	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181377_10046463	F070147	GGAGG	MKDVLIMILKAAMIDMKRRCEQNSDEGSRDIYGKWHGQIKTMVDTIENGGVK
Ga0181377_10046464	F016004	GGTGG	MNKELLKILETLKEDFEMLQDGRWDMNYSDGSEIQASLDNVEKAINIIKNNE
Ga0181377_10046466	F015402	N/A	MGKIKKLLDFQFDFELNQEDIDEELMTRNDYDYQYEKWLKSKEFVEYVNGELDSTRPKYSEYDIMSATRYASEYITIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWTTKNT

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