NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1005276

Scaffold Ga0181377_1005276


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1005276 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3468
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F046689Metagenome / Metatranscriptome151N
F099884Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10052762F099884GGAMMASTKITLTLWRCKLEILIDKISETRQERLLNPQMSDHYRTWFQGKYGMKLYDIKVGRKWVFIRSKSHRARLPLAKFKTQAFVQWHCDARTHASSETYAETGRYKKSRGWWRNYGFESNPADVNYDRGHLIWK
Ga0181377_10052766F046689AGGAGMKQGHLINKINRLIPIANATPMSEFYDDDSTGIWIRGSEYSYKGSLSYERLLFEYYLDDEAVHPDLKEIIEDAGWFWEPYNAGTLMLYPN
Ga0181377_10052767F002593GGAGMSKLIYSRNGSETTESITNAQPQIQAIWNQAHRFGANIVRVRAEKNRFGTDTGRTFNSFHHGLVSVYKQKDKVHESNALYFARKIPLTKVNKGMQILEIASSLDVQDTLDTVDAIQYYSETSLFERLWNRIRYGTPMSINS
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