NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1007663

Scaffold Ga0181377_1007663


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1007663 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2724
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016691Metagenome / Metatranscriptome245Y
F067912Metagenome / Metatranscriptome125Y
F079339Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10076633F079339N/AMSYLEYRRKVYDELISKIDKGMDIKSLRKHLVKKINHLEYLKSYE
Ga0181377_10076637F067912N/AMTDYLEKFLIKMITHYVPDGIDPIIHVNCRAHMFEIISNLIKEEKIPPKLSIIKYLCMNYKETIYSKLSTLN
Ga0181377_10076638F016691N/AMKVGSFVECIDDKFSSEQLTKLNKIPKKGNYYTIREIVEYPEYNRVGVRLEELSNPPIDRDGSPHEPSFGIFRFRELEIPPPMELKIREILDNDLELVETEDDGLFRKISN
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