NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181377_1014294

Scaffold Ga0181377_1014294


Overview

Basic Information
Taxon OID3300017706 Open in IMG/M
Scaffold IDGa0181377_1014294 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1838
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-29.499Long. (o)-71.609Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020816Metagenome / Metatranscriptome222N
F032867Metagenome / Metatranscriptome179Y
F042853Metagenome / Metatranscriptome157N
F052274Metagenome / Metatranscriptome143N
F054777Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0181377_10142942F054777AGGAGGMTNKINDETLERLYEDVVADDEAGLIDDVINNVAYLNGLHADDDRDEILQFIAEQEFYDQFT
Ga0181377_10142943F042853AGGAGGMSTEGTYLIEIERHYIATIEVEADSKREAIRYAHSDENQHIANRNEDYFYHFEDLLHKPTVARFKSYEEQYPEED
Ga0181377_10142944F032867AGGAGGMDELEKMIDNLVDNHYRVQHLIGTEADESEYLADIEEEDDDSI
Ga0181377_10142945F020816AGGAGGMIVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDE
Ga0181377_10142949F052274GAGGMNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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