NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181363_1013889

Scaffold Ga0181363_1013889


Overview

Basic Information
Taxon OID3300017707 Open in IMG/M
Scaffold IDGa0181363_1013889 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1629
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F005781Metagenome / Metatranscriptome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0181363_10138891F005781N/AMAYTDLFNEAIADITATLTAVTGLRVINDATKIVPNCVFLDAPSFETIAGGGNIVRM
Ga0181363_10138892F001326GAGMATYTVTNKYLIDNFAVLQLLTPSEIAVGSSIVVASVDATFNGSYVVRALPQYLFIGVDTQGDLLYDYQVPIADQVLYAKTADDVQRVAASGTVAYSPNCTWITIAELITYLGISLANPSDDYTLATQARNAANDFCYRRRQESGYIDSLTTSPGHDVTLATLMYAAALWRSRGSIEATYATFDGMGSSPQQSLTPIVKQLLGIPRPAVA
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