NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181363_1016715

Scaffold Ga0181363_1016715


Overview

Basic Information
Taxon OID3300017707 Open in IMG/M
Scaffold IDGa0181363_1016715 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1462
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019119Metagenome / Metatranscriptome231N
F077051Metagenome / Metatranscriptome117Y
F077197Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0181363_10167152F077197AGAAGGMFLPIEFKDEQGPYIEHLNVTHITRISFINPRNPDAGSKIHLRTGEVLKTTMSFDVLSQEIDDAWESASTLILSTILSEKAKLMKKSDLLNEESSEPDLLSEV
Ga0181363_10167153F077051N/AMTENELTDLGFNKVEVNDLESQNGYDYYYYTLDIFNNLTLISVDNDRVEGENWYVYNLDWPDQFKLQTVDQVQNFLRSVGHFSS
Ga0181363_10167155F019119AGGAGMNTEGSKTILDSLENFMIKSFLGTQFVTYFDREMEKRIMDEMLELSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDEENLHMVTLSIKSFRDLRILEHGEYSKVNKAYTKIAKDYPHEILNHEVFMKTMSPANG
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