Scaffold Ga0181369_1006986

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181369_1006986

Scaffold Ga0181369_1006986

Overview

Basic Information
Taxon OID	3300017708 Open in IMG/M
Scaffold ID	Ga0181369_1006986 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2961
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.099	Long. (^o)	-70.892	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F009922	Metagenome	311	Y
F071638	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181369_10069862	F009922	AGGAG	MHTDNTFDINSFDKDRTGAPASFNQCRAIGYKFAKKGETMNWKLQKQIQGCLYGLAKDQRLTFKKAHQLLQGKTLPKVYFDKINLYLQENS
Ga0181369_10069863	F071638	AGGAG	MSKNIDTKKFNSNEKALRYIKELGFSLKDRHCFKEDRSFLYTKKFSKQKVYLRSTYDFLNDNTIEMGTVWTVQVF
Ga0181369_10069865	F002593	GGAG	MSKLIYSRNGSETTESINDASPMIKSIWYQAHSFGANIVRVRAEKNRFGADTGRTFNSFHHGKVSVYKQKDQVHESNALYFARKIPLTKVNKGMQILEIASSLDVQDTLDTVDAIQYYSETSFFERLWNRIRYGTPMSITS

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