NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181369_1027178

Scaffold Ga0181369_1027178


Overview

Basic Information
Taxon OID3300017708 Open in IMG/M
Scaffold IDGa0181369_1027178 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1364
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.099Long. (o)-70.892Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032640Metagenome179Y
F073494Metagenome120Y
F074857Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0181369_10271781F073494AGGAGMSDNQWESNEISMWINNDESLHELARKSESANDFFDVLEMYGVSELGGIKLTPWNVRESFEDAND
Ga0181369_10271783F032640GAGGMRVIDSKISAMITKGLNKEKFDRKLSKRDRVVSDGHGKVRVILWNTEIAVLDAQTDEIIVKNGGFESVTTKSRMNALLYEWARGNPSISQRKWVWYINERCPLTRDQKSKKFQGLAAFPLKVWR
Ga0181369_10271784F074857AGGAMNTPKNYRNPQSFREVAKQAQKLSEMAYLEACQPKELRNQALMNHCYKHAKTLTKTLVTAGYWESSVISLG
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