NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1003702

Scaffold Ga0181387_1003702


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1003702 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3057
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074736Metagenome119N
F086825Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10037023F086825GAGGMFIKESYVYTLPADMNDPEGPTRWVGCSSGECGYERCEDDSSYMIRMKPVLLRMFKVNGRQVCEGCLKEWRAEISEWIE
Ga0181387_10037027F074736GAGMFDKVMRGGSFTYTASGTTWSSNGPWNYIDSNVLYTQDEIDIGGMTTTQEETFYPEAATIQNSPFYTVPGVVLRDPGDPTAGYVPYGALFEYVLITESPFKVDKWVADQTYSGDGTSWIPVYSCPGIDPRRTTDQATTLGFENILYGRVQMIVHNSSLPQQAGVVYSTNEFGSMTPTASDRLYVTRFVVIQPLGGQTIPNGSGIQLPHMRVVLVGSGKEENDLSYIMRLRNSYLLQQDVN
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