NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181387_1006654

Scaffold Ga0181387_1006654


Overview

Basic Information
Taxon OID3300017709 Open in IMG/M
Scaffold IDGa0181387_1006654 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2267
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000913Metagenome / Metatranscriptome838Y
F010198Metagenome / Metatranscriptome307Y
F016661Metagenome245Y
F095309Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181387_10066542F000913AGGMKYFYVEHYGEEIRIEWNESATFNLQMPVGGEWVDYHCFTCYGIESEHEALEHAMEILLESENEVA
Ga0181387_10066544F010198AGGMRIANKDGFRFGESAYLIGHEFGLICVSYGNNEQEALDNAVDSGYMDSERMADADYKEYDANGWHDSFIYAGNANEPFWSNYLWIKPASERKKEVA
Ga0181387_10066547F016661AGGMNYNAERYLALKRYELEVKRDKIRAVLFNLTIGGYAVLLAVQVIRGL
Ga0181387_10066548F095309AGGGGGMSYSEYRNKLRKLSAKYNEAYKRYGWGADTTRKLRQQKTDLRAKYAVHSFDYAVETLTSKGIL
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