NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1000681

Scaffold Ga0181403_1000681


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1000681 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8323
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005364Metagenome / Metatranscriptome403Y
F060349Metagenome / Metatranscriptome133Y
F092866Metagenome107Y
F101911Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_100068110F005364GGAMSDLKNKIYTIIKEEIRSVLSERSYRYGGLLDPDKFDPVDPEIHIRGFGTMSRSSLRTEIATRLEGALKTAKDASIGGPNSYDKYKSLEGVLEDKGVLMLQIKAEQEIAEQLESLRKKGGRRAQPIPKQF
Ga0181403_100068116F060349N/AMSIDKNKKKVLKAYPNAHVDYDGDGIRIMNGDIFIAEDYFMPNTKDETKAWEYAAIACRVTQNFNRTHPMRMDLSAIESKLNRINLRRRRSRKNDK
Ga0181403_100068119F092866GGAMGFHKRYIDDEQIIDIYRSIGCQAVIDRFTKGVDAIIISGELAERVHTALNILKVDRIHGFNRISEIISEASLQKGFKN
Ga0181403_10006814F101911N/AMSCPYTNFKNKILDYIGILRTPREEYGGMAACPFVGPEIDKGKLMIDKFDPNETTLLEKIAEFESSEYDSALFAQVTDEILSAADTRSYQDFINKTLRTNGYKHLKCICFNPNDKIEVAGFNPRKDAPYFLINIASRKVLARAHKSLLGTKYFDNFNTKYLDYLMIEEKENAKKEKTKSR
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