Scaffold Ga0181403

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1001890 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4860
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (94.12%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

4860

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (94.12%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.55

Long. (^o)

-118.4

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010198	Metagenome / Metatranscriptome	307	Y
F014373	Metagenome / Metatranscriptome	263	N
F016661	Metagenome	245	Y
F065668	Metagenome	127	N
F078585	Metagenome	116	N
F095309	Metagenome	105	N
F097118	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_100189010	F016661	AGG	MNYTAERYLALKQFEREQQRDKIRAVLWNVTIVGLYTMVVIQVMRGFL
Ga0181403_100189014	F097118	AGGTGG	MITFPSGLKFGNGESSLVDSLFTGSTTNDGWYTVTGRKNKTLRFFTGNGKPLFYIVSNKYGITSGNLTSNGNKFYYMAGTCSLTSKQLGLNKLDYTTEKTFITDIIEVA
Ga0181403_100189015	F010198	AGG	MRIANKDGFRFGENAYLIGHEFGLICVSYGNNEQEALDNAVDSGYMDSERMADSDYKEYDANGWHDSFIYAGNASEPFWANYLWIKPASERKKEVA
Ga0181403_10018902	F014373	GGAG	VSRCKACDVILTEAELRKKDRVTDEYLDLCSVCHSASDETIEENWSLAEDNGIIRSNN
Ga0181403_10018905	F078585	GGAG	MSRYEDDNSYDYSDYCEGRGYYESYTEKPFDEDEASLRRIEAREEKEREAKLYPPIGKHEMQERIKEVKTRLGVKQYENL
Ga0181403_10018908	F065668	GGA	MFYTVWVGGVEVNSHLTNREEAHRIASNWRNDGYSDVIVERYKPYEYHS
Ga0181403_10018909	F095309	GAGG	MSYSEYRNKLRKLSVKYNEAYKQLGWGADTTRKLRQQKTDLRAKYAVHSFDYAVETLTSKGIL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181403_1001890

Overview

Ecosystem & Geography

Associated Families

Sequences