Scaffold Ga0181403_1003203

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181403_1003203

Scaffold Ga0181403_1003203

Overview

Basic Information
Taxon OID	3300017710 Open in IMG/M
Scaffold ID	Ga0181403_1003203 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3670
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005706	Metagenome / Metatranscriptome	392	N
F038672	Metagenome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181403_10032034	F005706	N/A	MKESRVLKALGLSSLDIQNMLTNGMTMPKIAKKYKITYISLVQAYRIQKKDFKYIDYKQPKKELEDIKTVSFGSDRLYTEESLNENELLAFYKYEQKNKAYFEQRTTLF
Ga0181403_10032037	F038672	N/A	MDELDVMLRKNKLDIMIIKASAEVEKTNNKVKKEGLEVLMDILELIHDLQHEIRQNYKDIARLKYENAVAYKENAILKSDFSTYKHNLKKAELESNKNG

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