NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1003760

Scaffold Ga0181403_1003760


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1003760 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3369
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010878Metagenome / Metatranscriptome298Y
F032867Metagenome / Metatranscriptome179Y
F046985Metagenome150N
F069855Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10037601F046985AGGAGGMSDLIELYNESWSEEFNVDVDASKSMKVHVAPKTYAMLVQIGVFNIHGKGISDWARKVNVEAIYMNLDFSVDMLLKNYQAIKMAVILKEYPFRTGYQQQADKIWNNILQHL
Ga0181403_10037602F010878GAGGMKIKAWNIGIVWEDGTEENIGDIPDWVANRVDEFLNELEEEYE
Ga0181403_10037603F032867AGGAGMDELEKMIDDLIDNHYRRQHLIGTEADESEYLADISEEDDEN
Ga0181403_10037609F069855GAGGMAMEKVIVNHPLGGTTVKLKHVESLEPKELSKNQKKKLLKGYYSKEKHVAMLTSLMNGKHYNRKANNKNGILPTQMGAIRKSIYKLNPETLAHMIREQEKAIRV
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