NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1005743

Scaffold Ga0181403_1005743


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1005743 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2708
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005105Metagenome / Metatranscriptome412Y
F007826Metagenome344Y
F012166Metagenome283Y
F015027Metagenome / Metatranscriptome258Y
F030601Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10057432F012166GAGMADLVNSGVFLERKLTPEEKLWKAVLSQGVYEACSKKYNALPLTYGEMRSALEWVNMSNKDFCVVCQFAGYDPRYIFRKAKDKINKWLPNGA
Ga0181403_10057433F005105N/AMVRKICDRCMGNGYRRIWKDQTESEKITIQCAKCESAGEINEEPNYDSNGFGTDKLQ
Ga0181403_10057435F015027AGGAGMQDKLYEATSREVMSEHEEYVNADVPKQVWVDRNKYLHEHVNKLTNEIIELRKDNKRLTKELNDKEEHVNFLRRSGAI
Ga0181403_10057436F007826AGGAGGMNKKTAFTFKLLNLIKKCREKGKFQLAIKIIDKYKIDRKKLAEDYYD
Ga0181403_10057438F030601GGAVIELIKRILRLKTIHRDRGTYSATGDSLDLSDDGQPSDDSRRPLGENTVRGRVSQDDKPKQPIFVNEDPEYCKHLAKFFKGEK
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