NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181403_1018558

Scaffold Ga0181403_1018558


Overview

Basic Information
Taxon OID3300017710 Open in IMG/M
Scaffold IDGa0181403_1018558 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1481
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029562Metagenome188Y
F035078Metagenome173Y
F046640Metagenome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0181403_10185582F029562AGGMKVGDLVRVSSTAVSINWKPEQGYLGLIASPVRLGADAQYVNVQSVKTGGALWVRAYRITPLNETEGVK
Ga0181403_10185583F035078GAGGMKEQTTKIETFRSHLLDRIRENRVGEIGYNSEGIATFEVMPELQNYTWVIDLADREGVVATSASGSAGTRLTITEEKTNV
Ga0181403_10185586F046640GGAGGMKVGDLVRVHLLNDLDWYPALGVFMGYQGRKDGYTSHSFVFVEGKNLRFESIDVKAVK
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