NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1001258

Scaffold Ga0181391_1001258


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1001258 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7528
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (73.68%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002399Metagenome / Metatranscriptome563Y
F004603Metagenome431Y
F019114Metagenome231Y
F032075Metagenome / Metatranscriptome181Y
F048285Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100125813F002399AGGCGGMKPRSHKSIIGQLRKKYGLKDNTPIHKVEQIMTAEDWQAFSMALTFPNGKPTNRGK
Ga0181391_100125815F032075AGGAGGMTKLHYTKYQENYKNYILACLDDEDSLIGKNLSREEKIKYLFDRFNSEYGWKVGRTRNDTKQNVLSEWLSGIAINIPYSYCDIIELAKNMGSVDYNLSSVQEDRICENYWNFMSYMILLLEEEIKEVA
Ga0181391_10012583F019114AGGAGMKQLEARMVEARDEFYRNKRRKGFMAFWWSDPLHYLLVLEVAIADASSKSINFEAIVKLLPSSMGSRSTVATVLEDFVARGYMCKKVGKDKRERVYTICPDSMVLMNDWFTKRDFSLKAV
Ga0181391_10012587F048285N/AMKIDPIQLEQATAFILETNKYIYEQAKELATQHLEAEDNKNFKFRIKRYEPESKETLLHFADEITAWAECEKNYPLMDFIDKFFKTKKGY
Ga0181391_10012589F004603AGGAMIFSININGLIVDWCYTINNQEKQYHQTWIPKLSDIQILTKELNGLTVSEVRKLILEDIQPDIQMVRDNTNKKAKARRQKNV
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