NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1004401

Scaffold Ga0181391_1004401


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1004401 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007259Metagenome354Y
F009034Metagenome324Y
F068728Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181391_100440112F068728GGAMRQTLYQRLTPECVEALKYNSKRWHGATDKIVSVLSSHKFWSDLKVGDVNFVIQFVDLPFAKITSGTYAFGENIIKDE
Ga0181391_10044012F007259N/AMIFDKELRAEVKIQRDAIHGLLKHHLPKCDLTKIGDSEIQLTWYCTPSNIRETLLTCSMYGDWQFEEHQWESFDNYHHSTDLKLDYTSPANDIVNALMKLLK
Ga0181391_10044014F009034N/AMDNNNMKTIKFLKDNRIQIGKRVFRPYCISDLPNNFGCINYGESDGVTEWFGYKGFTYIPEN
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