NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181391_1007687

Scaffold Ga0181391_1007687


Overview

Basic Information
Taxon OID3300017713 Open in IMG/M
Scaffold IDGa0181391_1007687 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2827
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043680Metagenome156Y
F043946Metagenome / Metatranscriptome155N
F048981Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0181391_10076871F043946N/AMIKYSELQELNLEELTQLKGQVNALIQGKQVIQLGKIKVGDEVMVNHKKAGGKYTVVKMNRKTYTLENMFGRVKCSIGLIRPIAA
Ga0181391_10076872F048981N/AMATIKEIYNELKMIMEDVDAYVEEADNANQASDVVGTVQRPLDKILSALDIILDDEVAGVYENDEDDEIYEREYDTDW
Ga0181391_10076877F043680N/AMTEQTLFELYLSGSITHAQYIGNLKQLNEKHIQNQSSKTSHGGRTSKQQETPSVEEDTWF
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