NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1004444

Scaffold Ga0181412_1004444


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1004444 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4716
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003482Metagenome / Metatranscriptome484Y
F099108Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10044442F099108N/AMSIKIISCHPVFNENAVVLSRKFNWKLEHEFDPQSSDIYLVLGGHEMAHQLLEAQFRKNSSYGYIIMNSEQIHSQFMKNKYYIELMKRNVVFDYTTINTDYLRKTHDIKVLSYYFFEFLSIETKNPKPKYDVTFIGSKTEDRVKLMKELEDEFDDLKFYVDFDWKHNSSNSMTEIMNDSKVVLNIGYYSDYRPLESHRINKALACHCDVVSLMSNDEDANKFYEDYCYMTTDIKDTLHKYFNDELEPKKPYEDLVKTLAQKFHPHMMFIVDHIQKKLKSIHNNNGTSTEIVSQSTSTDSNVSSNTSQEIETGK
Ga0181412_10044446F003482N/AMEDEDLQKKMKELMIERGFKKIIEDTTKLIKRDTQYIPTMEQLDDDNKGQWVEHDENNFTKMFDGLLDYCADEEEYDNLDWNTVNYTVYGADYYEEKFPGFAPEVYEILAKSTEEENKVIDNRTPPLKIRHEEVTLSFD
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Institute for Fundamental Biomedical Research
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