NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181412_1004608

Scaffold Ga0181412_1004608


Overview

Basic Information
Taxon OID3300017714 Open in IMG/M
Scaffold IDGa0181412_1004608 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4621
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F011658Metagenome / Metatranscriptome288Y
F070571Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0181412_10046081F004523N/AMEYISTEIRSAREAMTIFKILGIKEITTERQRKNGTQVFELPIQQMWQTLNPKPLRFATYEAGYVRNVSEYNSSPYQINKTKKVSTQTSGYAYDTIERILIHSWEDRLIYLAKFIIKNYYKKPTYIINEYTVKCLREAYYEYNKTGLPWGDSVDQYGRPYISKATLDECDIQVIINGHRYNLS
Ga0181412_10046082F005491N/AMSLYKDTRFNGKLVRLEDVIDEIYDRALETIDDGLYELLENKDDDEFYMDYKEAFPLIVEKLQKFHDVED
Ga0181412_10046083F070571N/AMTKEELQVKIGTIESMIADANTEATKYGEQLADLKKQHADLSKPKLTPQQYDKLHALVEEAVESYDFDDLDGYSIDYGIDYDNRVTCESFCFDNSDEVVRIIMENVENMFAEIKEDDNQENQD
Ga0181412_10046084F011658N/AMKTLYQQLKPEIKQALNEQEENYPSLVKGVKTALKDNYLWSHLSIGQARDLIGFSDISLGSMSSYDWSFGEKFLICED
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