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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017716 Open in IMG/M |
| Scaffold ID | Ga0181350_1000001 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 364576 |
| Total Scaffold Genes | 669 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 464 (69.36%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 36 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F055453 | Metagenome | 138 | Y |
| F058120 | Metagenome / Metatranscriptome | 135 | Y |
| F071209 | Metagenome / Metatranscriptome | 122 | Y |
| F074429 | Metagenome | 119 | Y |
| F078676 | Metagenome / Metatranscriptome | 116 | Y |
| F082643 | Metagenome / Metatranscriptome | 113 | Y |
| F097281 | Metagenome / Metatranscriptome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181350_1000001155 | F058120 | GAGG | MTTNIDIGVALLESIKSKDAQQALTQVQQFSDNMRNVTVGADYVMWITEPVNLTSVHKALAEDLAVPPRLLAIRRSAMSRTQKGALLVQAMVLAIKRVHNL |
| Ga0181350_1000001175 | F078676 | AGGA | MPIQIHGAASAMQNLTADLQYYICYASSPGAFTDPNPNPPVSQELARLVNIQVTGNPLDESQKNFEVLLMSIGLRAMPVTLADPVAVIQLADYTLELSGEGFIWKFAVERGVQFYNFTPYGEPGPVGLLVDDLDGVILPSGVRVTTVNGSPTGWAKNIAFSRTGSI |
| Ga0181350_1000001226 | F055453 | GGA | MINSIMKIKDILNESATDIVARFYKEASKDYDEFYNPDDVKYKKKNAEYYDEHFKEWFKEDVVPVFTKPVDKPQAKYNNKPEGTKLQSPGFRGLQYALAHAGLPYDHHVQKYQPFAPAVMSSEMDGAKNNNGQ |
| Ga0181350_1000001230 | F071209 | AGG | MEKQDLYVPMNELIRDKETSWTFTNINLPYYEIAKRGIVMWCVGNLEGRWTMLGGNKFGFEDGADATIFRMQFGW |
| Ga0181350_1000001240 | F097281 | N/A | MSKQETKTLPVNLKEQNASHTFRVVIRDREHFYKLVKWLNENVGKGADKWTMEGRVLKRLKTGTVNPNIYIFPQDFDPASALYLSLI |
| Ga0181350_1000001372 | F074429 | GGAG | MAKKVTSFSFDKAINRIARPSVFDRIVKEIDAKEIPAKYVEQILVQYYDGNVVELSGNEITHPIPMNRNAQWAKMEESFKRMRDVKVFINTDVLEEDINELVEKYLGSYC |
| Ga0181350_1000001606 | F082643 | N/A | MDYPYPNYGVRTTEGYVALGANVQAVVNAINTNTVVPYGDYGGPNLYWFQTMNNGLGNIIYTIFDRDTTLGLASFSVRYGAASTIQQILFEQYPRSQIDLQFLILPHVDHPLPTNGTVIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |