Scaffold Ga0181404_1000537

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0181404_1000537

Scaffold Ga0181404_1000537

Overview

Basic Information
Taxon OID	3300017717 Open in IMG/M
Scaffold ID	Ga0181404_1000537 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11380
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010198	Metagenome / Metatranscriptome	307	Y
F016661	Metagenome	245	Y
F065668	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181404_100053715	F010198	AGG	MRIANKDGFRFGERAYLIGHEFGLICVSYGNNEQEALDNAVDEGYMDSERMEDADYKEYDANGWHDSFICLGNASEPFWSEYLWIKPANERRKEVA
Ga0181404_100053716	F016661	GAGG	MNYNAERYLALKRYELEVKRDKWRTILWNVSVTGLFAMVLIQIAEVL
Ga0181404_100053717	F065668	GGAGG	MLYTIWVGGVEVTSHLTNREEAYRIASNWRNEGYDDVIVERYKPYA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.