NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181404_1014084

Scaffold Ga0181404_1014084


Overview

Basic Information
Taxon OID3300017717 Open in IMG/M
Scaffold IDGa0181404_1014084 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2088
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002593Metagenome / Metatranscriptome545Y
F010275Metagenome / Metatranscriptome306Y

Sequences

Protein IDFamilyRBSSequence
Ga0181404_10140841F002593N/APLLTLITMEIVNMSKLIYSRNGSATTESIDNASPQVRWIWKQAHSFGANIVRVRADQLRYGKSTGKTFDAFHNGKVSVYKQKDNVHPDNALYFARKIPLTKVNKGMQILEIHTNIDVQDTLDTVTGIKYHSQTSFFGRLWNRIRYGTPMSITA
Ga0181404_10140843F010275GGAGMSNNVNSTIMDNMRDNVHELWVIEGRPDLEDDCLQYCYDNIDRPVPITMIEFLSIHCSQAVSTADYRQMAMESLNAQRNHYTKED
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