NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181390_1014103

Scaffold Ga0181390_1014103


Overview

Basic Information
Taxon OID3300017719 Open in IMG/M
Scaffold IDGa0181390_1014103 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2737
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002902Metagenome / Metatranscriptome522Y
F105896Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181390_10141031F105896N/AMQRNFILTDLMKTGENALYEQFINMHSFRDQTFDCTSEYYMLQHYDLDSYDRKFAIIDRSKMGEQHPSHNTEYRQELERRKVLLHSQGFKFILATPWESKENIDNMSLYPKQTNEIVWSGGVSWFWFYMYNKHKDST
Ga0181390_10141034F002902AGGAGGMAGVAQGNGGKSGTSNGIGIRTRVLNLAKTNMTEAELDAALTYLMAGDVSGTNDAHTIAAVAPLTESGEFTSGTTDNVQVAIQGTGAATAASDFGTGSTGVTMTVIADFIASEDVDHE
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