Scaffold Ga0181390_1139482

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181390_1139482

Scaffold Ga0181390_1139482

Overview

Basic Information
Taxon OID	3300017719 Open in IMG/M
Scaffold ID	Ga0181390_1139482 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	618
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004771	Metagenome	424	Y
F018267	Metagenome	236	Y
F053549	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181390_11394821	F018267	GGAGG	VRVGDLISFKPKSFGDDDWSNPCIVLDAFVNDDRRGGGFKDTIWVVWCDGGKYMVNPRN
Ga0181390_11394822	F004771	AGGA	MKRVIKVGDLVRMHTHDTGLVGIVLERHPKAISTTPAQIGIKWFGGSGKTDWEPEAWLEVVCEGRRSNLVQTEIVW
Ga0181390_11394823	F053549	N/A	VKWENVLNDSMDHHREDHGIVIKMSRTGHDTESAQVLFTDGETWWLDTQRLEIVNETK

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