NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1012167

Scaffold Ga0181383_1012167


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1012167 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F066838Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10121672F002374N/AMISNTQMDQILLYTSLIVASLSFFLCLYACSRVGKILNSVKGLDWDIIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAVKQQNNVMDIKNKIVGG
Ga0181383_10121674F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTSATADTFLNVSVNNAEFSKDVSVPALNAGQPFGVLNNSYVNNDLITTGSQRNRVLVRFTNDTSATRTIRCGVFIG
Ga0181383_10121675F066838AGGTGGMGQEFFINSQELEDKIRQLLPSQGGAGAGFDLSASTQIIPVIDLTESAEGSNVRADLQTAISFNTATAFNVNNATTSVIVNTGYWRIIGTCN
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