NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181383_1013505

Scaffold Ga0181383_1013505


Overview

Basic Information
Taxon OID3300017720 Open in IMG/M
Scaffold IDGa0181383_1013505 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2188
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006792Metagenome364Y
F032871Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0181383_10135051F032871N/AMAYDLKNVFYLDTSATITKATAGGGSAQLDLSAYIDPIARGRQKGTGLAIYKTYYSIVNSEDTNEVAPKVTDEGVMSFSLQAGAGLGDVATGGISTAAPTIYQSSNALLVSAGNFYAPGAAATATMVPETYIEPSKDVPYVVVRDNVCLVYNVSAEKTMTSTSILSVRMECAIVNLDQATLNQLLRTQTV
Ga0181383_10135052F006792N/AMTKKKFSFGANPSMKEVTPGTEARFRFNGPVEIIDTEWGEKYSFPIVLLSHDSYDSFPIKCNWESKSQVAKELYVAYSVDPADEFVKAYEKAEWQLTRFDTGAYWIDQL
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