NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181373_1011480

Scaffold Ga0181373_1011480


Overview

Basic Information
Taxon OID3300017721 Open in IMG/M
Scaffold IDGa0181373_1011480 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1663
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameSubarctic Pacific Ocean
CoordinatesLat. (o)-20.1Long. (o)-70.419Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007537Metagenome / Metatranscriptome349Y
F017556Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0181373_10114801F007537N/AMRKLLYLIVAGAMLTSCEKDFLDDYNQHQYEPADVNYEFKMTGRCTQDANGYYHLPLIPQEDKQTLHRFGAYVTNIDKWGLPTQVTWTCDKFWYTPDTLGFTYIEIGNVPTGESPWSFQNFAVTGYEGLVVTIVNGTSYADPVKDSVYCMIAPIGAMAGDTATVWGKAYFEEGD
Ga0181373_10114802F017556N/AMAYSKFKVGQAVTFPSSGKIGDRARKGGTITAIEKMYELKDENKRYYPNGACRGELTTIKELSKGKSKGYAYRCKTIQPNGYIAEIVMVEEYKLKLSTEKEVINSYTIY
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