Scaffold Ga0181373_1060807

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181373_1060807

Scaffold Ga0181373_1060807

Overview

Basic Information
Taxon OID	3300017721 Open in IMG/M
Scaffold ID	Ga0181373_1060807 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	680
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Subarctic Pacific Ocean
Coordinates	Lat. (^o)	-20.1	Long. (^o)	-70.419	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011123	Metagenome	295	Y
F017760	Metagenome / Metatranscriptome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181373_10608071	F017760	AGGAGG	MIENTLFNIPMWSIPTLNFKKKKPQLEKLCKAFPEKKHGIQTFSTNRQRDRSGFADAFNNIMGEELGMLSQQ
Ga0181373_10608072	F011123	AGGAG	MKMVEFTNASPPYEGTKILINVDHIVSVYEDLTKEKKVALWSKNNFWHVEESIEEVYNKLGLEYKHKKEEVN

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