NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181388_1014294

Scaffold Ga0181388_1014294


Overview

Basic Information
Taxon OID3300017724 Open in IMG/M
Scaffold IDGa0181388_1014294 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052604Metagenome / Metatranscriptome142Y
F074740Metagenome119Y
F079332Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0181388_10142942F074740N/AMKTIKIEHTWCESEDRWIYLEYNEQNKICGMNFMQGDEYEVFKTQYAENDKGLMEFYETMLYTFPIENKSVNTVDFINKVMWAYCSADQIRAKY
Ga0181388_10142943F052604N/AMITTKNQAIQFLTTMQQLFPFVHPEDDLTQIEPPFTDEQAKYLTNCFDQCYEVLPDPCGTILNEIRPKMQMFNPKN
Ga0181388_10142944F079332N/AMIGTNAEHLAEQITEVTIQQMYDTIEHQLEYADIDLDGDEYYEMLDCITELTIKNIINTLNK
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