NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181398_1003435

Scaffold Ga0181398_1003435


Overview

Basic Information
Taxon OID3300017725 Open in IMG/M
Scaffold IDGa0181398_1003435 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4291
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049671Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0181398_10034358F049671AGGAGMVKVVIGTIGILGLASCNYAVADSPCDYVKDVQTNWTQQIEKTSNIDKKVFPYVEDTRKCMMTMDVTINGQTYPAEGSYVFGPDMSENDACDNATVNAKKSVISEVSPEILSATTEMNCSIQESPVVAEAPTETVTIQEGTPVETETIISRKIVDRSTDNVVQYIPDGKTINIGGFTIGFNHGREPGKCYANWHTGGTDCY
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