NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181381_1017706

Scaffold Ga0181381_1017706


Overview

Basic Information
Taxon OID3300017726 Open in IMG/M
Scaffold IDGa0181381_1017706 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1637
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004163Metagenome450Y
F012625Metagenome279Y
F057683Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0181381_10177062F004163AGGAGMKQTLEQLKRLVLDLKQYFEKSLPLILIGVALGYTFANHLEAQTPKDIGFATVEDMSFLVQELKDCRDNSGTLDGSY
Ga0181381_10177064F012625GAGMDPLHNKTISVGDLVKEHTYSSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKIIDGNAHPNYLQDYIQGKRW
Ga0181381_10177066F057683AGGAGMSIKDNLDRETYGDLMYRLGQMDAILPDPQGNISRFHEESRRIREGQPPQIVRALDEVLQRNSQTQNQQHPMHPPSEEQEE
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