NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181381_1047863

Scaffold Ga0181381_1047863


Overview

Basic Information
Taxon OID3300017726 Open in IMG/M
Scaffold IDGa0181381_1047863 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028035Metagenome / Metatranscriptome193N
F046634Metagenome151Y
F069444Metagenome / Metatranscriptome124Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0181381_10478631F076505N/ANMTFHIWMGLLAILSSFVMSFLGVILMVHLNFWLGLLLMMTGMVCLLKAIPRTNEEI
Ga0181381_10478632F028035GAGMITYNMEVQLEGDTDKCGNYITVQYEFPFPENSVLIERDKEMNRILNKPIIITTINNNNCHL
Ga0181381_10478633F046634AGGAGMTSKQQSFVPYTESKPLEERIAYVKANPGKYMPPAQYEIIKSIKTSIEALDSKVNEILAK
Ga0181381_10478635F069444AGGAGGMTRNLIVYKVDYINRHEDYNTQTGRFVRTKRIVMT
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