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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017727 Open in IMG/M |
| Scaffold ID | Ga0181401_1006283 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4014 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → unclassified Pusillimonas → Pusillimonas sp. (ex Stolz et al. 2005) | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.55 | Long. (o) | -118.4 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004242 | Metagenome / Metatranscriptome | 447 | Y |
| F018105 | Metagenome / Metatranscriptome | 237 | Y |
| F027318 | Metagenome / Metatranscriptome | 195 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181401_10062834 | F004242 | N/A | MYMGLGHKKPHSNRLGLKKMAHTSMRLGLKASDIAMAAAPVVAFGGAEVLPLAGALEAGGAVGKKVFGLGSKIV |
| Ga0181401_10062835 | F018105 | N/A | MSYTLDTPYSSQVVFMNSENSVFKQIDGKGEYTYTFTTPIQLPINCEMLISVTDATLPNVIPNVTALNNKISFHVPLFSKFFTISVQEDDGNIDKVYSVTEWLSYVNAKIVIEAIGQFTLYGEYNVSSSKIKWYSNFEFKIINTDSYPTTCFDLIGFAKTRTNTPAYVDEANGVLLTSTTNPSYHIPMPSIVNFSGTRFIFLKFRDITVPNLNSTGVTDNAIVRIDNNAPYGYYIFYRPMEVQRFVIRKRTINNLTFTLTDSKGQELNIFSSDAQITLKIEFKYKPELRSMEEGTIQYELRKLGQIPKLSQSDFEGVYNPETNEFLRE |
| Ga0181401_10062836 | F027318 | N/A | MAMHQGTMKLTPQQSNYIPPGKFIYTDETFLVKQPIAEKEEFPRQGKKLVPAGFSFKHGGQEFQPVYQPAPSLPMNYGTYIYNIVDGYQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |