NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181415_1037581

Scaffold Ga0181415_1037581


Overview

Basic Information
Taxon OID3300017732 Open in IMG/M
Scaffold IDGa0181415_1037581 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1110
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage MEDS2 group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011846Metagenome / Metatranscriptome286Y
F075429Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0181415_10375811F075429GAGMPDTTELPETVTEFLEDGSVAVVVGHLRGWVSSAHLIEPKANQLMRKWLEEKSEALLNEDYDGAS
Ga0181415_10375813F011846N/AEQENDGSSSKDNYLGYTKLEQGKPANFALLEQDPLEYWLVWAEAKASGSMKPFRFMGQPSSDEIDLELGSEYVQSMNYDKTAIRKPQQCLTWPVYNWDMDRVQVLEVSHISLARQFAKYGLNKKYSKNLLDWDFELSKIKADMVRYELLIVPRDEDEHNETQMEKAWLQVQKGGFDLKRMVTGDDPFSEG
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