NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181365_1009451

Scaffold Ga0181365_1009451


Overview

Basic Information
Taxon OID3300017736 Open in IMG/M
Scaffold IDGa0181365_1009451 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2423
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)108
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066572Metagenome126N
F083629Metagenome112N
F086810Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0181365_10094513F083629GGAMRHTNLPHHFYVQVDNQYLGPNMPSGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTESFDPDFDDSSQPWGAMGNDIEAVQFKALEGLTVNAFRAEVSGIHTGIVIDWADGYSRYPAEHKPLSLIIADAGYFLLLPNNYFTVKDKHFVDTKKYVDQMKFYKRGDLVYWET
Ga0181365_10094516F086810GAGMMYPTTRNKARIVRAVMYLEHEGFTVGQTKTGFVAVDDDGIVIQATPYRTSAQIFHPVLKIYREEYALSLQEIYWFTEKLSLLTEWAKDPNAKEPSRVLSVSRRPVPSRQRTA
Ga0181365_10094517F066572N/AMEQLWPKWKLEPVMSNLLNEKWGQLHQDKLQSCIRQHRLARDFKPEISAIHKAYCALIPQNLVGEREVEQTRNDLERCTPISAKEFAEWDVWAEAMLKNVTNEELEQVREFIGHVPESRRILAVAVEHVRKPSVRYA
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